Chęciny 2022: program of the meeting
Thursday – 7th of July
| 12:00- 13:00 | lunch | Pod Zamkiem Restaurant |
| 13:15 – 13:45 | check-in | ECEG |
| 13:45 – 13:50 | Welcome | |
| chair: Krzysztof Szczepaniak |
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| 13:50 – 14:20 | Adam Gudyś | K-mer-based analysis of microbial genomes |
| 14:20 – 14:33 | Metody Hollender | Workflow for genome recovery of protistan prokaryotic symbionts from single-cell data |
| 14:33 – 14:46 | Małgorzata Orłowska | Fucose in fungi |
| 14:46 – 14:59 | Paweł Hałakuc | How to investigate complex genomes in diverse taxa |
| 14:59 – 15:13 | Michał Karlicki | From huge metagenomes to single plastid genomes – preliminary results of searching for plastid genomes in freshwater metagenomic data |
| 15:15 – 15:40 | coffee break | |
| chair: Małgorzata Orłowska |
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| 15:40 – 16:10 | Tomasz Kościółek | Understanding and Shaping the Human Gut Microbiome for Health using Bioinformatics and Machine Learning |
| 16:10 – 16:23 | Rafał Madaj | In silico analysis of selected nerve agents’ non-covalent binding affinity towards acetylcholinoesterase |
| 16:23 – 16:36 | Bogna Smug | Domain architecture shows extensive mosaicism of phage proteins engaged in host tropism |
| 16:36 – 16:49 | Krzysztof Szczepaniak | Evolutionarily conserved fragments: an attempt to better understand domain composition and mosaicism of phage proteins |
| 16:50 – 17:30 | free time | |
| 17:30 – 19:00 | castle | Royal Castle in Chęciny |
| 19:15 | dinner | Pod Zamkiem Restaurant |
Friday – 8th of July
| 8:30 – 9:30 | breakfast | |
| chair: Rafał Madaj |
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| 9:30 – 10:00 | Jakub Barylski | Tell me who your enemy is, and I will still not tell you know who you are – the hard problem of phage-host prediction |
| 10:00 – 10:13 | Valentina Smacchia | Use of metabarcoding for the identification of freshwater microbial communities along the eutrophication gradient |
| 10:13 – 10:26 | Marta Sałek | Finding interaction patterns between protists and eukaryotes based on single-cell microbiome approach: obtaining good quality data for computational analyses |
| 10:26 – 10:39 | Kamil Krakowski | Functional analysis of prokaryotic homologs of programmed cell death factors |
| 10:40 – 11:10 | coffee break | |
| chair: Kacper Maciszewski |
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| 11:10 – 11:40 | Maria Górna | CLIPPERs mediate targeted protein degradation in Gram-negative bacteria |
| 11:40 – 11:53 | Wanangwa Ndovie | ANImm : A fast and accurate tool for calculating average nucleotide identity between pairs of viral genomes |
| 11:53 – 12:06 | Julia Gołębiowska | Predicting absorption wavelengths of rhodopsins using machine learning-based methods |
| 12:06 – 12:19 | Vyshakh R Panicker | Lytic Phage Depolymerases and Capsule Specificities: Insights from Literature and Sequence Analysis |
| 12:30 – 13:30 | lunch | |
| chair: Bogna Smug |
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| 13:30 – 14:00 | Anna Muszewska | Ancestral traits in the genomes of Mucoromycota fungi |
| 14:00 – 14:13 | Kacper Maciszewski | In the spotlight, losing IR region: challenging the importance of inverted repeats in plastid genomes |
| 14:13 – 14:26 | Stanisław Antonowicz | Workflow for inferring microbial interaction networks based on amplicon sequencing data |
| 14:26 – 14:39 | Jędrzej Kubica | Modelling of a putative programmed cell death receptor from Nostoc punctiforme |
| 14:39 – 14:45 | Closing | |
| 14:45 – 15:15 | coffee break | |
| 15:15 – 16:30 | free time | |
| 16:30 – 18:00 | nature reserve | Rzepka Mountain Nature Reserve |
| 19:00 | bonfire | |
Saturday – 9th of July
| 8:30-9:30 | breakfast | |
| 9:30 – 11.00 | check out |