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dr hab. Rafał Milanowski, prof. ucz. (Head of the Institute of Evolutionary Biology)

Research interests

  • Genetics and genomics of protists
  • Molecular evolution
  • Molecular phylogeny
  • Barcoding DNA

Didactics

  • Botany
  • Basic genetics
  • Evolutionism (BiBS)
  • Seminars (more)

Research projects in progress

  • Characteristics of nonconventional introns in nuclear genes of euglenids (Nowe Idee 2B, IDUB)
  • Evolution of introns in nuclear genes of euglenids (NCN OPUS 2015/19/B/NZ8/00166)
  • Characteristics of nonconventional introns in nuclear genes of euglenids (NCN OPUS 2016/21/B/NZ2/01759)

Publications

Mikina, Weronika; Hałakuc, Paweł; Milanowski, Rafał

Transposon-derived introns as an element shaping the structure of eukaryotic genomes Journal Article

In: Mobile DNA, vol. 15, pp. 15, 2024, ISSN: 1759-8753.

Abstract | Links | BibTeX

Gumińska, Natalia; Hałakuc, Paweł; Zakryś, Bożena; Milanowski, Rafał

Circular extrachromosomal DNA in Euglena gracilis under normal and stress conditions Journal Article

In: Protist, vol. 175, no. 3, pp. 126033, 2024, ISSN: 1434-4610.

Abstract | Links | BibTeX

Jankowska, Katarzyna; Łukomska-Kowalczyk, Maja; Milanowski, Rafał; Fells, Alicja; Zakryś, Bożena

Biodiversity of autotrophic euglenids based on the group specific DNA metabarcoding approach Journal Article

In: Protist, vol. 175, no. 3, pp. 126024, 2024, ISSN: 1434-4610.

Abstract | Links | BibTeX

Fells, Alicja; Jiang, Xiaodie; Jankowska, Katarzyna; Łukomska-Kowalczyk, Maja; Milanowski, Rafał; Wang, Quanxi; Zakryś, Bożena

Molecular and morphological delimitation of species in Strombomonas (Euglenaceae) including a protocol for DNA isolation utilising a chelating resin Journal Article

In: TAXON, vol. 72, no. 4, pp. 733-750, 2023.

Abstract | Links | BibTeX

Jagielska, Maria; Hałakuc, Paweł; Płecha, Magdalena; Milanowski, Rafał

Mitochondrial genomes – unity and diversity Journal Article

In: Postępy Biochemii, vol. 69, no. 2, pp. 113-121, 2023.

Abstract | Links | BibTeX

Gumińska, Natalia; Milanowski, Rafał

Charakterystyka kolistych DNA u Eukarya Journal Article

In: Postępy Biochemii, vol. 68, no. 2, pp. 129-141, 2022, ISSN: 2720-5959.

Abstract | Links | BibTeX

Hałakuc, Paweł; Karnkowska, Anna; Milanowski, Rafał

Typical structure of rRNA coding genes in diplonemids points to two independent origins of the bizarre rDNA structures of euglenozoans Journal Article

In: BMC Ecology and Evolution, vol. 22, no. 1, pp. 59, 2022, ISSN: 2730-7182.

Abstract | Links | BibTeX

Chaber, Katarzyna; Łukomska-Kowalczyk, Maja; Fells, Alicja; Milanowski, Rafał; Zakryś, Bożena

Toward the robust resolution of taxonomic ambiguity within Lepocinclis (Euglenida) based on DNA sequencing and morphology Journal Article

In: Journal of Phycology, vol. 58, no. 1, pp. 105-120, 2022.

Abstract | Links | BibTeX

Soukal, Petr; Hrdá, Štěpánka; Karnkowska, Anna; Milanowski, Rafał; Szabová, Jana; Hradilová, Miluše; Strnad, Hynek; Vlček, Čestmír; Čepička, Ivan; Hampl, Vladimír

Heterotrophic euglenid Rhabdomonas costata resembles its phototrophic relatives in many aspects of molecular and cell biology Journal Article

In: Scientific Reports, vol. 11, no. 1, pp. 13070, 2021, ISSN: 2045-2322.

Abstract | Links | BibTeX

Gumińska, Natalia; Łukomska-Kowalczyk, Maja; Chaber, Katarzyna; Zakryś, Bożena; Milanowski, Rafał

Evaluation of V2 18S rDNA barcode marker and assessment of sample collection and DNA extraction methods for metabarcoding of autotrophic euglenids Journal Article

In: Environmental Microbiology, vol. 23, no. 6, pp. 2992–3008 , 2021.

Abstract | Links | BibTeX

Gumińska, Natalia; Zakryś, Bożena; Milanowski, Rafał

A New Type of Circular RNA derived from Nonconventional Introns in Nuclear Genes of Euglenids Journal Article

In: Journal of Molecular Biology, vol. 433, no. 3, pp. 166758, 2021.

Abstract | Links | BibTeX

Łukomska-Kowalczyk, Maja; Chaber, Katarzyna; Fells, Alicja; Milanowski, Rafał; Zakryś, Bożena

Description of Flexiglena gen. nov. and new members of Discoplastis and Euglenaformis (Euglenida) Journal Article

In: Journal of Phycology, vol. 57, no. 3, pp. 766-779, 2021.

Abstract | Links | BibTeX

Łukomska-Kowalczyk, Maja; Fells, Alicja; Chaber, Katarzyna; Milanowski, Rafał; Zakryś, Bożena

Taxon‐rich phylogeny and taxonomy of the genus Phacus (Euglenida) based on morphological and molecular data Journal Article

In: Journal of Phycology, vol. 56, no. 5, pp. 1135-1156, 2020.

Abstract | Links | BibTeX

Łukomska-Kowalczyk, Maja; Chaber, Katarzyna; Fells, Alicja; Milanowski, Rafał; Zakryś, Bożena

Molecular and Morphological Delimitation of Species in the Group of Lepocinclis Ovum-like taxa (Euglenida) Journal Article

In: Journal of Phycology, vol. 56, no. 2, pp. 283-299, 2020.

Abstract | Links | BibTeX

Ignatenko, Antonina; Gumińska, Natalia; Milanowski, Rafał

Mechanizmy utraty i nabywania intronów spliceosomalnych Journal Article

In: Postepy biochemii, vol. 65, no. 4, pp. 289–298, 2019, ISSN: 00325422.

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Kulczycka, Agata; Łukomska-Kowalczyk, Maja; Zakryś, Bożena; Milanowski, Rafał

PCR identification of toxic euglenid species Euglena sanguinea Journal Article

In: Journal of Applied Phycology, vol. 30, no. 3, pp. 1759–1763, 2018, ISSN: 0921-8971.

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Gumińska, Natalia; Płecha, Magdalena; Walkiewicz, Halszka; Hałakuc, Paweł; Zakryś, Bożena; Milanowski, Rafał

Culture purification and DNA extraction procedures suitable for next-generation sequencing of euglenids Journal Article

In: Journal of Applied Phycology, vol. 30, no. 6, pp. 3541–3549, 2018, ISSN: 1573-5176.

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Gumińska, Natalia; Płecha, Magdalena; Zakryś, Bożena; Milanowski, Rafał

Order of removal of conventional and nonconventional introns from nuclear transcripts of Euglena gracilis Journal Article

In: PLoS Genetics, vol. 14, no. 10, pp. e1007761, 2018, ISSN: 15537404.

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Zakryś, Bożena; Milanowski, Rafał; Karnkowska, Anna

Evolutionary Origin of Euglena Book Chapter

In: Schwartzbach, Steven D; Shigeoka, Shigeru (Ed.): Euglena: Biochemistry, Cell and Molecular Biology, vol. 973, pp. 3–17, Springer International Publishing, Cham, 2017, ISBN: 978-3-319-54910-1.

Abstract | Links | BibTeX

Zganiacz, Daria; Milanowski, Rafał

Charakterystyka kolistych cząsteczek kwasów rybonukleinowych (circRNA) Journal Article

In: Postepy biochemii, vol. 63, no. 3, pp. 221–232, 2017, ISSN: 0032-5422.

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Łukomska-Kowalczyk, Maja; Karnkowska, Anna; Krupska, Małgorzata; Milanowski, Rafał; Zakryś, Bożena

DNA barcoding in autotrophic euglenids: evaluation of COI and 18s rDNA Journal Article

In: Journal of Phycology, vol. 52, no. 6, pp. 951–960, 2016, ISSN: 00223646.

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Milanowski, Rafał; Gumińska, Natalia; Karnkowska, Anna; Ishikawa, Takao; Zakryś, Bożena

Intermediate introns in nuclear genes of euglenids – are they a distinct type? Journal Article

In: BMC Evolutionary Biology, vol. 16, no. 1, pp. 49, 2016, ISSN: 1471-2148.

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Łukomska-Kowalczyk, Maja; Karnkowska, Anna; Milanowski, Rafał; Łach, Łukasz; Zakryś, Bożena

Delimiting species in the Phacus longicauda complex (Euglenida) through morphological and molecular analyses Journal Article

In: Journal of Phycology, vol. 51, no. 6, pp. 1147–1157, 2015, ISSN: 00223646.

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Milanowski, Rafał; Karnkowska, Anna; Ishikawa, Takao; Zakryś, Bożena

Distribution of Conventional and Nonconventional Introns in Tubulin (alpha and beta) Genes of Euglenids Journal Article

In: Molecular Biology and Evolution, vol. 31, no. 3, pp. 584–593, 2014, ISSN: 1537-1719.

Abstract | Links | BibTeX

Zakryś, Bożena; Karnkowska-Ishikawa, Anna; Łukomska-Kowalczyk, Maja; Milanowski, Rafał

A new photosynthetic euglenoid isolated in Poland: Euglenaria clepsydroides sp. nov. (Euglenea) Journal Article

In: European Journal of Phycology, vol. 48, no. 3, pp. 260–267, 2013, ISSN: 0967-0262.

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Karnkowska-Ishikawa, Anna; Milanowski, Rafał; Triemer, Richard E; Zakryś, Boena

A redescription of morphologically similar species from the genus Euglena : E. laciniata, E. sanguinea, E. sociabilis, and E. splendens 1 Journal Article

In: Journal of Phycology, vol. 49, no. 3, pp. 616–626, 2013, ISSN: 00223646.

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Karnkowska-Ishikawa, Anna; Milanowski, Rafał; Triemer, Richard E; Zakryś, Bożena

Taxonomic revisions of morphologically similar species from two euglenoid genera: Euglena (E. granulata and E. velata) and Euglenaria (Eu. anabaena, Eu. caudata, and Eu. clavata) Journal Article

In: Journal of Phycology, vol. 48, no. 3, pp. 729–739, 2012, ISSN: 00223646.

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Karnkowska-Ishikawa, Anna; Milanowski, Rafał; Zakryś, Bożena

The species Euglena deses (Euglenaceae) revisited: new morphological and molecular data Journal Article

In: Journal of Phycology, vol. 47, no. 3, pp. 653–661, 2011, ISSN: 00223646.

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Koperski, Paweł; Milanowski, Rafał; Krzyk, Agnieszka

Searching for cryptic species in Erpobdella octoculata (L.) (Hirudinea: Clitellata): discordance between the results of genetic analysis and cross-breeding experiments Journal Article

In: Contributions to Zoology, vol. 80, no. 1, pp. 85–94, 2011, ISSN: 1383-4517.

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Bodył, Andrzej; Mackiewicz, Paweł; Milanowski, Rafał

Did Trypanosomatid Parasites Contain a Eukaryotic Alga–Derived Plastid in Their Evolutionary Past? Journal Article

In: Journal of Parasitology, vol. 96, no. 2, pp. 465–475, 2010, ISSN: 0022-3395.

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Karnkowska-Ishikawa, Anna; Milanowski, Rafał; Kwiatowski, Jan; Zakryś, Bożena

Taxonomy of the Phacus oscillans (Euglenaceae) and its close relatives-balancing morphological and molecular features Journal Article

In: Journal of Phycology, vol. 46, no. 1, pp. 172–182, 2010, ISSN: 00223646.

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Kosmala, Sylwia; Karnkowska-Ishikawa, Anna; Milanowski, Rafał; Kwiatowski, Jan; Zakryś, Bożena

Phylogeny and systematics of Euglena (Euglenaceae) species with axial, stellate chloroplasts based on morphological and molecular data-new taxa, emended diagnoses, and epitypifications Journal Article

In: Journal of Phycology, vol. 45, no. 2, pp. 464–481, 2009, ISSN: 00223646.

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Koperski, Paweł; Milanowski, Rafał; Krzyk, Agnieszka

Morphological , ecological and genetic divergence in po- pulations of Erpobdella octoculata (Hirudinea) Journal Article

In: Lauterbornia, vol. 65, no. 1986, pp. 63–67, 2008.

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Kosmala, Sylwia; Bereza, Magdalena; Milanowski, Rafał; Kwiatowski, Jan; Zakryś, Bożena

Morphological and molecular examination of relationships and epitype establishment of Phacus pleuronectes , Phacus orbicularis , and Phacus hamelii Journal Article

In: Journal of Phycology, vol. 43, no. 5, pp. 1071–1082, 2007, ISSN: 00223646.

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Kosmala, Sylwia; Milanowski, Rafał; Brzóska, Kamil; Pękala, Małgorzata; Kwiatowski, Jan; Zakryś, Bożena

Phylogeny and systematics of the genus Monomorphina (Euglenaceae) based on morphological and molecular data Journal Article

In: Journal of Phycology, vol. 43, no. 1, pp. 171–185, 2007, ISSN: 00223646.

Abstract | Links | BibTeX

Milanowski, Rafał; Kosmala, Sylwia; Zakryś, Bożena; Kwiatowski, Jan

Phylogeny of photosynthetic Euglenophytes based on combined chloroplast and cytoplasmic SSU rDNA sequence analysis Journal Article

In: Journal of Phycology, vol. 42, no. 3, pp. 721–730, 2006, ISSN: 0022-3646.

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Komosińska, Emanuela; Wódkiewicz, Maciej; Jarzyna, Ingeborga; Jarochowska, Emilia; Milanowski, Rafał; Chwedorzewska, Katarzyna; Wyszomirski, Tomasz

Some attempts to detect genetic differences between populations of small balsam (Impatiens parviflora DC.) Journal Article

In: Biodiversity: Research and Conservation, no. 3-4, pp. 245–247, 2006, ISSN: 2080-945X.

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Kosmala, Sylwia; Karnkowska, Anna; Milanowski, Rafał; Kwiatowski, Jan; Zakryś, Bożena

Phylogenetic and taxonomic position of Lepocinclis fusca comb. nov. (=Euglena fusca) (Euglenaceae): morphological and molecular justification Journal Article

In: Journal of Phycology, vol. 41, no. 6, pp. 1258-1267, 2005, ISSN: 00223646.

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Zakryś, Bożena; Empel, Joanna; Milanowski, Rafał; Gromadka, Robert; Borsuk, Piotr; Kędzior, Marta; Kwiatkowski, Jan

Genetic variability of Euglena agilis (Euglenophyceae) Journal Article

In: Acta Societatis Botanicorum Poloniae, vol. 73, no. 4, pp. 305–309, 2004, ISSN: 2083-9480.

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Zakryś, Boz. ena; Milanowski, Rafał; Empel, Joanna; Borsuk, Piotr; Gromadka, Robert; Kwiatowski, Jan

Two different species of Euglena, E. geniculata and E. myxocylindracea (Euglenophyceae), are virtually genetically and morphologically identical Journal Article

In: Journal of Phycology, vol. 38, no. 6, pp. 1190–1199, 2002, ISSN: 00223646.

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Milanowski, Rafał; Zakryś, B; Kwiatowski, Jan

Phylogenetic analysis of chloroplast small-subunit rRNA genes of the genus Euglena Ehrenberg. Journal Article

In: International Journal of Systematic and Evolutionary Microbiology, vol. 51, no. 3, pp. 773–781, 2001, ISSN: 1466-5026.

Abstract | Links | BibTeX