dr hab. Julia Pawłowska (Deputy head of the Institute of Evolutionary Biology)

@article{Ciach24,

title = {The interkingdom horizontal gene transfer in 44 early diverging fungi boosted their metabolic, adaptive, and immune capabilities},

author = {Ciach, Michał Aleksander and Pawłowska, Julia and Górecki, Paweł and Muszewska, Anna},

url = {https://doi.org/10.1093/evlett/qrae009},

doi = {10.1093/evlett/qrae009},

issn = {2056-3744},

year  = {2024},

date = {2024-03-05},

urldate = {2024-03-05},

journal = {Evolution Letters},

volume = {03},

pages = {qrae009},

abstract = {Numerous studies have been devoted to individual cases of horizontally acquired genes in fungi. It has been shown that such genes expand the hosts’ metabolic capabilities and contribute to their adaptations as parasites or symbionts. Some studies have provided an extensive characterization of the horizontal gene transfer (HGT) in Dikarya. However, in the early diverging fungi (EDF), a similar characterization is still missing. In order to fill this gap, we have designed a computational pipeline to obtain a statistical sample of reliable HGT events with a low false discovery rate. We have analyzed 44 EDF proteomes and identified 829 xenologs in fungi ranging from Chytridiomycota to Mucoromycota. We have identified several patterns and statistical properties of EDF HGT. We show that HGT is driven by bursts of gene exchange and duplication, resulting in highly divergent numbers and molecular properties of xenologs between fungal lineages. Ancestrally aquatic fungi are generally more likely to acquire foreign genetic material than terrestrial ones. Endosymbiotic bacteria can be a source of useful xenologs, as exemplified by NOD-like receptors transferred to Mortierellomycota. Closely related fungi have similar rates of intronization of xenologs. Posttransfer gene fusions and losses of protein domains are common and may influence the encoded proteins’ functions. We argue that there is no universal approach for HGT identification and inter- and intra-kingdom transfers require tailored identification methods. Our results help to better understand how and to what extent HGT has shaped the metabolic, adaptive, and immune capabilities of fungi.Horizontal gene transfer is a transmission of genes between organisms, distinct from vertical inheritance from parents to offspring. HGT seems to occur among all living forms. Our study focuses on horizontally transferred genes present in early diverging fungi (EDF). EDF is a relatively understudied group of organisms with vastly diverse lifestyles and tremendous ecological importance. They include arbuscular mycorrhizal Glomeromycota, the gut-dwelling symbionts of herbivores Neocallimastigomycota, or the parasitic Batrachochytrium. HGT has been reported to contribute to this diversity by facilitating niche adaptations in certain lineages. In our work, we have analyzed horizontally acquired genes in 44 fungal genomes, focusing on cases with clear phylogenetic evidence. We have designed a computational pipeline that detects a statistical sample of reliable HGTs. The pipeline is published alongside the article. We have analyzed the donors, acceptors, and properties of the transferred genes. We found transfers of genes that can expand the metabolic, adaptive, and immune capabilities of fungi.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{10.3389/fpls.2023.1288408,

title = {Biocontrol potential of Pseudomonas protegens ML15 against Botrytis cinerea causing gray mold on postharvest tomato (Solanum lycopersicum var. cerasiforme)},

author = {Nur Ajijah and Angelika Fiodor and Mikolaj Dziurzynski and Robert Stasiuk and Julia Pawlowska and Lukasz Dziewit and Kumar Pranaw},

url = {https://www.frontiersin.org/articles/10.3389/fpls.2023.1288408},

doi = {10.3389/fpls.2023.1288408},

issn = {1664-462X},

year  = {2023},

date = {2023-12-15},

urldate = {2023-01-01},

journal = {Frontiers in Plant Science},

volume = {14},

abstract = {Gray mold, caused by Botrytis cinerea is a major cause of post-harvest rot of fresh fruits and vegetables. The utilization of selected microorganisms as biocontrol agents is a promising alternative to effectively control gray mold on tomatoes. The current study was conducted to explore potential biocontrol mechanisms of the Pseudomonas strain to control infections on post-harvest tomatoes. Among the 8 tested bacterial isolates, Pseudomonas protegens ML15 demonstrated antagonistic activity to Botrytis cinerea. Moreover, P. protegens ML15 exhibited the production of siderophores, hydrogen cyanide, ammonia, exopolysaccharides, lipase, biosurfactant, 2,4-diacetylphloroglucinol, and several other antifungal compounds, such as 1-tetradecanol, cyclododecane, 2,4-di-tert-butylphenol, and 2-methyl-1-hexadecanol. A comprehensive genomic analysis of P. protegens ML15 unravels 18 distinct genetic regions with the potential for biosynthesizing secondary metabolites, known for their pivotal role in biocontrol responses against plant pathogens. In vivo, experiments showed that both culture suspension and cell-free supernatant of P. protegens ML15 significantly reduced fungal growth (53.0 ± 0.63%) and mitigated disease development (52.8 ± 1.5%) in cherry tomatoes at four days post-B. cinerea inoculation. During the infection, the application of P. protegens ML15 resulted in the augmentation of total antioxidant, phenolic content, and ascorbic acids content. Thus, our results suggested that P. protegens ML15’s role as a biocontrol agent against B. cinerea-induced postharvest tomato decay achieved through the secretion of antifungal substances, induction of tomato defense responses, and inhibition of mycelial growth of B. cinerea. These findings provide a significant contribution to the ongoing search for alternative, eco-friendly methods of controlling gray mold in fresh products. The utilization of P. protegens ML15 as a biocontrol agent could help to reduce the reliance on chemical fungicides and promote sustainable agriculture practices.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{nokey,

title = {Global consortium for the classification of fungi and fungus-like taxa},

author = {Hyde KD and Abdel-Wahab MA and Abdollahzadeh J and Abeywickrama PD and Absalan S and Afshari N and Ainsworth AM and (...) and Pawłowska J and (...) and Zucconi L},

url = {https://www.mycosphere.org/pdf/MYCOSPHERE_14_1_23-1.pdf},

doi = {Doi:10.5943/mycosphere/14/1/23 },

year  = {2023},

date = {2023-12-01},

urldate = {2023-12-01},

journal = {Mycosphere},

volume = {14},

issue = {1},

pages = {1960-2012},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{nokey,

title = {The UNITE database for molecular identification and taxonomic communication of fungi and other eukaryotes: sequences, taxa and classifications reconsidered},

author = {Abarenkov, Kessy and Nilsson, R Henrik and Larsson, Karl-Henrik and Taylor, Andy F S and May, Tom W and Frøslev, Tobias Guldberg and Pawlowska, Julia and Lindahl, Björn and Põldmaa, Kadri and Truong, Camille and Vu, Duong and Hosoya, Tsuyoshi and Niskanen, Tuula and Piirmann, Timo and Ivanov, Filipp and Zirk, Allan and Peterson, Marko and Cheeke, Tanya E and Ishigami, Yui and Jansson, Arnold Tobias and Jeppesen, Thomas Stjernegaard and Kristiansson, Erik and Mikryukov, Vladimir and Miller, Joseph T and Oono, Ryoko and Ossandon, Francisco J and Paupério, Joana and Saar, Irja and Schigel, Dmitry and Suija, Ave and Tedersoo, Leho and Kõljalg, Urmas},

url = {https://academic.oup.com/nar/advance-article-pdf/doi/10.1093/nar/gkad1039/53343664/gkad1039.pdf},

doi = {https://doi.org/10.1093/nar/gkad1039},

isbn = {0305-1048},

year  = {2023},

date = {2023-11-12},

journal = {Nucleic Acids Research},

pages = {gkad1039},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Sokolowska23,

title = {What can be lost? Genomic perspective on the lipid metabolism of Mucoromycota},

author = {Blanka Sokołowska and Małgorzata Orłowska and Alicja Okrasińska and Sebastian Piłsyk and Julia Pawłowska and Anna Muszewska},

doi = {https://doi.org/10.1186/s43008-023-00127-4},

year  = {2023},

date = {2023-11-06},

journal = {IMA Fungus},

volume = {14},

issue = {22},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{SIEDLECKI2023,

title = {Discovery of Formicomyces microglobosus gen. et sp. nov. strengthens the hypothesis of independent evolution of ant-associated fungi in Trichomeriaceae},

author = {Igor Siedlecki and Marcin Piątek and Maria Majchrowska and Alicja Okrasińska and Magdalena Owczarek-Kościelniak and Julia Pawłowska},

url = {https://www.sciencedirect.com/science/article/pii/S1878614623001083},

doi = {https://doi.org/10.1016/j.funbio.2023.10.005},

issn = {1878-6146},

year  = {2023},

date = {2023-10-24},

urldate = {2023-10-24},

journal = {Fungal Biology},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{OSTROWSKI2023,

title = {Cold adapted and closely related mucoraceae species colonise dry-aged beef (DAB)},

author = {Grzegorz Ostrowski and Danuta Jaworska and Magdalena Płecha and Wiesław Przybylski and Piotr Sałek and Krzysztof Sawicki and Julia Pawłowska},

url = {https://www.sciencedirect.com/science/article/pii/S1878614623001034},

doi = {https://doi.org/10.1016/j.funbio.2023.09.005},

issn = {1878-6146},

year  = {2023},

date = {2023-10-23},

urldate = {2023-01-01},

journal = {Fungal Biology},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{1316b,

title = {Microbiological awareness among upper-secondary school students in the context of covid-19 vaccination},

author = {Beniamin Abramczyk and Szymon Ławicki and Weronika Pyter and Agata Bluszcz and Ignacy Piszczek and Jonatan Audycki and Julia Pawłowska},

url = {https://oaji.net/articles/2023/987-1697653260.pdf},

doi = {https://doi.org/10.33225/jbse/23.22.749},

issn = {1648-3898},

year  = {2023},

date = {2023-10-01},

urldate = {2023-10-01},

journal = {Journal of Baltic Science Education},

volume = {22},

issue = {5},

pages = {749-766},

chapter = {749-766},

abstract = {There is evidence that education levels have an impact on people's attitudes toward vaccination. The recent COVID-19 pandemic has highlighted the need to maximize vaccinations - one of the most efficient ways to prevent the spread of infectious diseases. Young individuals play a major role in disease transmission due to their intense social life and frequent asymptomatic infections. In this study, a survey of upper secondary school students in Poland was conducted to assess their microbiological awareness depending on subjects that they studied on the extended level and COVID-19 vaccination willingness. Participants learning biology and chemistry on the extended level had significantly higher microbiological awareness. Clear proof of microbiological awareness's influence on vaccination willingness was not found. Although studying biology did not significantly influence students' willingness to be vaccinated, their place of residence did. Students from bigger cities were more willing to get vaccinated. These results show that while science education raises microbiological awareness among upper secondary school students, place of residence, likely through social pressure, is a more important factor influencing vaccination willingness. It is suggested that more effort should be put into educating society as a whole and encouraging vaccination particularly.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Gryganskyi2023,

title = {Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned?},

author = {Andrii P. Gryganskyi and Jacob Golan and Anna Muszewska and Alexander Idnurm and Somayeh Dolatabadi and Stephen J. Mondo and Vira B. Kutovenko and Volodymyr O. Kutovenko and Michael T. Gajdeczka and Iryna M. Anishchenko and Julia Pawlowska and Ngoc Vinh Tran and Ingo Ebersberger and Kerstin Voigt and Yan Wang and Ying Chang and Teresa E. Pawlowska and Joseph Heitman and Rytas Vilgalys and Gregory Bonito and Gerald L. Benny and Matthew E. Smith and Nicole Reynolds and Timothy Y. James and Igor V. Grigoriev and Joseph W. Spatafora and Jason E. Stajich},

url = {https://www.mdpi.com/2076-2607/11/7/1830},

doi = {https://doi.org/10.3390/microorganisms11071830 },

year  = {2023},

date = {2023-07-18},

urldate = {2023-07-18},

journal = {Microorganisms},

volume = {11(7)},

pages = {1830},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{CrousEtAl2023,

title = {Fungal Planet description sheets: 1478–1549},

author = {Crous P.W. and Osieck, E.R. and Shivas, R.G. and Tan, Y.P. and Bishop-Hurley, S.L. and Esteve-Raventós, F. and Larsson, E. and Luangsa-ard, J.J. and Pancorbo, F. and Balashov, S. and Baseia, I.G. and Boekhout, T. and Chandranayaka, S. and Cowan, D.A. and Cruz, R.H.S.F. and Czachura, P. and De la Peña-Lastra, S. and Dovana, F. and Drury, B. and Fell, J. and Flakus, A. and Fotedar, R. and Jurjević, Ž. and Kolecka, A. and Mack, J. and Maggs-Kölling, G. and Mahadevakumar, S. and Mateos, A. and Mongkolsamrit, S. and Noisripoom, W. and Plaza, M. and Overy, D.P. and Piątek, M. and Sandoval-Denis, M. and Vauras, J. and Wingfield, M.J. and Abell, S.E. and Ahmadpour, A. and Akulov, A. and Alavi, F. and Alavi, Z. and Altes, A. and Alvarado, P. and Anand, G. and Ashtekar, N. and Assyov, B. and Banc-Prandi, G. and Barbosa, K.D. and Barreto, G.G. and Bellanger, J.-M. and Bezerra, J.L. and Bhat, D.J. and Bilanski, P. and Bose, T. and Bozok, F. and Chaves, J. and Costa-Rezende, D.H. and Danteswari, C. and Darmostuk, V. and Delgado, G. and Denman, S. and Eichmeier, A. and Etayo, J. and Eyssartier, G. and Faulwetter, S. and Ganga, K.G.G. and Ghosta, Y. and Goh, J. and Góis, J.S. and Gramaje, D. and Granit, L. and Groenewald, M. and Gulden, G. and Gusmão, L.F.P. and Hammerbacher, A. and Heidarian, Z. and Hywel-Jones, N. and Jankowiak, R. and Kaliyaperumal, M. and Kaygusuz, O. and Kezo, K. and Khonsanit, A. and Kumar, S. and Kuo, C.H. and Læssøe, T. and Latha, K.P.D. and Loizides, M. and Luo, S.M. and Maciá-Vicente, J.G. and Manimohan, P. and Marbach, P.A.S. and Marinho, P. and Marney, T.S. and Marques, G. and Martín, M.P. and Miller, A.N. and Mondello, F. and Moreno, G. and Mufeeda, K.T. and Mun, H.Y. and Nau, T. and Nkomo, T. and Okrasińska, A. and Oliveira, J.P.A.F. and Oliveira, R.L. and Ortiz, D.A. and Pawłowska, J. and Pérez-De-Gregorio, M.À. and Podile, A.R. and Portugal, A. and Privitera, N. and Rajeshkumar, K.C. and Rauf, I. and Rian, B. and Rigueiro-Rodríguez, A. and Rivas-Torres, G.F. and Rodriguez-Flakus, P. and Romero-Gordillo, M. and Saar, I. and Saba, M. and Santos, C.D. and Sarma, P.V.S.R.N. and Siquier, J.L. and Sleiman, S. and Spetik, M. and Sridhar, K.R. and Stryjak-Bogacka, M. and Szczepańska, K. and Taşkın, H. and Tennakoon, D.S. and Thanakitpipattana, D. and Trovao, J. and Türkekul, İ. and van Iperen, A.L. and van 't Hof, P. and Vasquez, G. and Visagie, C.M. and Wingfield, B.D. and Wong, P.T.W. and Yang, W.X. and Yarar, M. and Yarden, O. and Yilmaz, N. and Zhang, N. and Zhu, Y.N. and Groenewald, J.Z.},

url = {https://www.ingentaconnect.com/content/nhn/pimj/pre-prints/content-nbc-persoonia-0661#},

doi = {https://doi.org/10.3767/persoonia.2023.50.05},

year  = {2023},

date = {2023-07-03},

urldate = {2023-07-03},

journal = {Persoonia - Molecular Phylogeny and Evolution of Fungi},

volume = {50},

pages = {158-310},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Przybylski2023,

title = {Fungal Biostarter Effect on the Quality of Dry-Aged Beef},

author = {Przybylski, Wiesław and Jaworska, Danuta and Płecha, Magdalena and Dukaczewska, Karina and Ostrowski, Grzegorz and Sałek, Piotr and Sawicki, Krzysztof and Pawłowska, Julia},

url = {https://www.mdpi.com/2304-8158/12/6/1330},

doi = {10.3390/foods12061330},

issn = {2304-8158},

year  = {2023},

date = {2023-03-21},

urldate = {2023-03-21},

journal = {Foods},

volume = {12},

number = {6},

pages = {1330},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{DZIURZYNSKI2022159072,

title = {Revealing the diversity of bacteria and fungi in the active layer of permafrost at Spitsbergen island (Arctic) – Combining classical microbiology and metabarcoding for ecological and bioprospecting exploration},

author = {Mikolaj Dziurzynski and Adrian Gorecki and Julia Pawlowska and Lukasz Istel and Przemyslaw Decewicz and Piotr Golec and Michal Styczynski and Krzysztof Poszytek and Anna Rokowska and Dorota Gorniak and Lukasz Dziewit},

url = {https://www.sciencedirect.com/science/article/pii/S004896972206171X},

doi = {https://doi.org/10.1016/j.scitotenv.2022.159072},

issn = {0048-9697},

year  = {2023},

date = {2023-01-15},

journal = {Science of The Total Environment},

volume = {856},

number = {2},

pages = {159072},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{PawlowskaPrzeglad2022,

title = {Mycological reports of the Fungal Diversity and Conservation Section of the Polish Mycological Society. Part 2.},

author = {Grażyna Domian and Judyta Konik and Barbara Kudławiec and Anna Kujawa and Marcin Lożek and Grażyna Naser and Julia Pawłowska and Sebastian Piskorski and Aleksandra Rosa-Gruszecka and Małgorzata Stasińska and Natalia Stokłosa},

url = {https://www.kp.org.pl/images/pp/artykuły_od_2019/4_2022_XXXIII_4/Domian%20et%20al_2022_Obserwacje%20mykologiczne.pdf},

year  = {2022},

date = {2022-12-31},

urldate = {2022-12-31},

journal = {Przegląd Przyrodniczy},

volume = {XXXIII},

number = {4},

pages = {12-59},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{https://doi.org/10.1111/1462-2920.16007,

title = {Marginal lands and fungi – linking the type of soil contamination with fungal community composition},

author = {Alicja Okrasińska and Przemyslaw Decewicz and Maria Majchrowska and Lukasz Dziewit and Anna Muszewska and Somayeh Dolatabadi and Łukasz Kruszewski and Zuzanna Błocka and Julia Pawłowska},

url = {https://sfamjournals.onlinelibrary.wiley.com/doi/abs/10.1111/1462-2920.16007},

doi = {https://doi.org/10.1111/1462-2920.16007},

year  = {2022},

date = {2022-05-31},

journal = {Environmental Microbiology},

abstract = {Summary Fungi can be found in almost all ecosystems. Some of them can even survive in harsh, anthropogenically transformed environments, such as post-industrial soils. In order to verify how the soil fungal diversity may be changed by pollution, two soil samples from each of the 28 post-industrial sites were collected. Each soil sample was characterized in terms of concentration of heavy metals and petroleum derivatives. To identify soil fungal communities, fungal internal transcribed spacer 2 (ITS2) amplicon was sequenced for each sample using Illumina MiSeq platform. There were significant differences in the community structure and taxonomic diversity among the analysed samples. The highest taxon richness and evenness were observed in the non-polluted sites, and lower numbers of taxa were identified in multi-polluted soils. The presence of monocyclic aromatic hydrocarbons, gasoline and mineral oil was determined as the factors driving the differences in the mycobiome. Furthermore, in the culture-based selection experiment, two main groups of fungi growing on polluted media were identified – generalists able to live in the presence of pollution, and specialists adapted to the usage of BTEX as a sole source of energy. Our selection experiment proved that it is long-term soil contamination that shapes the community, rather than temporary addition of pollutant.

},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Wijayawardene2022,

title = {Outline of Fungi and fungus-like taxa – 2021},

author = {Wijayawardene NN and Hyde KD and Dai DQ and Sánchez-García M and Goto BT and Saxena RK and Erdoğdu M and Selçuk F and Rajeshkumar KC and Aptroot A and Błaszkowski J and Boonyuen N and da Silva GA and de Souza FA and Dong W and Ertz D and Haelewaters D and Jones EBG and Karunarathna SC and Kirk PM and Kukwa M and Kumla J and Leontyev DV and Lumbsch HT and Maharachchikumbura SSN and Marguno F and Martínez-Rodríguez P and Mešić A and Monteiro JS and Oehl F and Pawłowska J and Pem D and Pfliegler WP and Phillips AJL and Pošta A and He MQ and Li JX and Raza M and Sruthi OP and Suetrong S and Suwannarach N and Tedersoo L and Thiyagaraja V and Tibpromma S and Tkalčec Z and Tokarev YS and Wanasinghe DN and Wijesundara DSA and Wimalaseana SDMK and Madrid H and Zhang GQ and Gao Y and Sánchez-Castro I and Tang LZ and Stadler M and Yurkov A and Thines M},

url = {https://www.mycosphere.org/pdf/MYCOSPHERE_13_1_2.pdf},

doi = {Doi 10.5943/mycosphere/13/1/2},

year  = {2022},

date = {2022-02-23},

journal = {Mycosphere},

volume = {13},

number = {1},

pages = {53-453},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Trovão2021,

title = {Fungal Planet description sheets: 1284–1382},

author = {Crous Pedro and Osieck, E.R and (...) Pawłowska, Julia and Portugal, A and (...) and Trovão, João and (...) Groenewald, J.Z.},

url = {https://www.ingentaconnect.com/contentone/nhn/pimj/2021/00000047/00000001/art00006},

doi = {https://doi.org/10.3767/persoonia.2021.47.06},

issn = {1878-9080},

year  = {2021},

date = {2021-12-24},

journal = {Persoonia},

volume = {47},

pages = {309},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Crous2021,

title = {Fungal Planet description sheets: 1182–1283},

author = {Crous P.W. and Cowan D.A. and Maggs-Kölling G. and Yilmaz N. and Thangavel R. and Wingfield M.J. and Noordeloos M.E. and Dima B. and Brandrud T.E. and Jansen G.M. and Morozova O.V. and Vila J. and Shivas R.G. and Tan Y.P. and Bishop-Hurley S. and Lacey E. and Marney T.S. and Larsson E. and Le Floch G. and Lombard L. and Nodet P. and Hubka V. and Alvarado P. and Berraf-Tebbal A. and Reyes J.D. and Delgado G. and Eichmeier A. and Jordal J.B. and Kachalkin A.V. and Kubátová A. and Maciá-Vicente J.G. and Malysheva E.F. and Papp V. and Rajeshkumar K.C. and Sharma A. and Spetik M. and Szabóová D. and Tomashevskaya M.A. and Abad J.A. and Abad Z.G. and Alexandrova A.V. and Anand G. and Arenas F. and Ashtekar N. and Balashov S. and Bañares Á. and Baroncelli R. and Bera I. and Biketova A.Yu. and Blomquist C.L. and Boekhout T. and Boertmann D. and Bulyonkova T.M. and Burgess T.I. and Carnegie A.J. and Cobo-Diaz J.F. and Corriol G. and Cunnington J.H. and da Cruz M.O. and Damm U. and Davoodian N. and de A. Santiago A.L.C.M. and Dearnaley J. and de Freitas L.W.S. and Dhileepan K. and Dimitrov R. and Di Piazza S. and Fatima S. and Fuljer F. and Galera H. and Ghosh A. and Giraldo A. and Glushakova A.M. (...) and Gorczak M. and Gouliamova D.E. and Gramaje D. and Groenewald M. and Gunsch C.K. and Gutiérrez A. and Holdom D. and Houbraken J. and Ismailov A.B. and Istel Ł. and Iturriaga T. and Jeppson M. and Jurjević Ž. and Kalinina L.B. and Kapitonov V.I. and Kautmanova I. and Khalid A.N. and Kiran M. and Kiss L. and Kovács Á. and Kurose D. and Kusan I. and Lad S. and Læssøe T. and Lee H.B. and Luangsa-ard J.J. and Lynch M. and Mahamedi A.E. and Malysheva V.F. and Mateos A. and Matočec N. and Mešić A. and Miller A.N. and Mongkolsamrit S. and Moreno G. and Morte A. and Mostowfizadeh-Ghalamfarsa R. and Naseer A. and Navarro-Ródenas A. and Nguyen T.T.T. and Noisripoom W. and Ntandu J.E. and Nuytinck J. and Ostrý V. and Pankratov T.A. and Pawłowska J. and Pecenka J. and Pham T.H.G. and Polhorský A. and Posta A. and Raudabaugh D.B. and Reschke K. and Rodríguez A. and Romero M. and Rooney-Latham S. and Roux J. and Sandoval-Denis M. and Smith M.Th. and Steinrucken T.V. and Svetasheva T.Y. and Tkalčec Z. and van der Linde E.J. and v.d. Vegte M. and Vauras J. and Verbeken A. and Visagie C.M. and Vitelli J.S. and Volobuev S.V. and Weill A. and Wrzosek M. and Zmitrovich I.V. and Zvyagina E.A. and Groenewald J.Z.},

url = {https://www.ingentaconnect.com/content/nhn/pimj/pre-prints/content-nbc-persoonia-0595},

doi = {https://doi.org/10.3767/persoonia.2021.46.11},

year  = {2021},

date = {2021-07-31},

journal = {Persoonia},

volume = {46},

number = {11},

pages = {313-528},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{jof7040285,

title = {Terpenoid Biosynthesis Dominates among Secondary Metabolite Clusters in Mucoromycotina Genomes},

author = {Grzegorz Koczyk and Julia Pawłowska and Anna Muszewska},

url = {https://www.mdpi.com/2309-608X/7/4/285},

doi = {10.3390/jof7040285},

issn = {2309-608X},

year  = {2021},

date = {2021-04-09},

journal = {Journal of Fungi},

volume = {7},

number = {4},

pages = {285},

abstract = {Early-diverging fungi harbour unprecedented diversity in terms of living forms, biological traits and genome architecture. Before the sequencing era, non-Dikarya fungi were considered unable to produce secondary metabolites (SM); however, this perspective is changing. The main classes of secondary metabolites in fungi include polyketides, nonribosomal peptides, terpenoids and siderophores that serve different biological roles, including iron chelation and plant growth promotion. The same classes of SM are reported for representatives of early-diverging fungal lineages. Encouraged by the advancement in the field, we carried out a systematic survey of SM in Mucoromycotina and corroborated the presence of various SM clusters (SMCs) within the phylum. Among the core findings, considerable representation of terpene and nonribosomal peptide synthetase (NRPS)-like candidate SMCs was found. Terpene clusters with diverse domain composition and potentially highly variable products dominated the landscape of candidate SMCs. A uniform low-copy distribution of siderophore clusters was observed among most assemblies. Mortierellomycotina are highlighted as the most potent SMC producers among the Mucoromycota and as a source of novel peptide products. SMC identification is dependent on gene model quality and can be successfully performed on a batch scale with genomes of different quality and completeness.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Gorczak2021,

title = {18th Congress of European Mycologists Bioblitz 2019 – Naturalists Contribute to the Knowledge of Mycobiota and Lichenobiota of Białowieża Primeval Forest},

author = {Michał Gorczak and Igor Siedlecki and Zuzanna Błocka and Maria Cullen and Inita Daniele and Howard Fox and Christoffer Harder and Juha Kinnunen and Michał Kochanowski and Irmgard Krisai-Greilhuber and Maria Majchrowska and Diana Meiere and Martina Oberhofer and Dmitry Schigel and Beatrice Senn-Irlet and Dorota Wiktorowicz and Marta Wrzosek and Julia Pawłowska},

url = {https://pbsociety.org.pl/journals/index.php/am/article/view/am.55211/8039},

doi = {DOI: https://doi.org/10.5586/am.55211},

year  = {2021},

date = {2021-02-25},

journal = {Acta Mycologica},

volume = {55},

number = {2},

pages = {55211},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{muszewska2021,

title = {Metabolic Potential, Ecology and Presence of Associated Bacteria Is Reflected in Genomic Diversity of Mucoromycotina},

author = {Anna Muszewska and Alicja Okrasińska and Kamil Steczkiewicz and Olga Drgas and Małgorzata Orłowska and Urszula Perlińska-Lenart and Tamara Aleksandrzak-Piekarczyk and Katarzyna Szatraj and Urszula Zielenkiewicz and Sebastian Piłsyk and Ewa Malc and Piotr Mieczkowski and Joanna S. Kruszewska and Przemysław Bernat and Julia Pawłowska},

url = {https://www.frontiersin.org/article/10.3389/fmicb.2021.636986},

doi = {10.3389/fmicb.2021.636986},

year  = {2021},

date = {2021-02-15},

journal = {Frontiers in Microbiology},

volume = {12},

pages = {239},

abstract = {Mucoromycotina are often considered mainly in pathogenic context but their biology remains understudied. We describe the genomes of six Mucoromycotina fungi representing distant saprotrophic lineages within the subphylum (i.e., Umbelopsidales and Mucorales). We selected two Umbelopsis isolates from soil (i.e., U. isabellina, U. vinacea), two soil-derived Mucor isolates (i.e., M. circinatus, M. plumbeus), and two Mucorales representatives with extended proteolytic activity (i.e., Thamnidium elegans and Mucor saturninus). We complement computational genome annotation with experimental characteristics of their digestive capabilities, cell wall carbohydrate composition, and extensive total lipid profiles. These traits inferred from genome composition, e.g., in terms of identified encoded enzymes, are in accordance with experimental results. Finally, we link the presence of associated bacteria with observed characteristics. Thamnidium elegans genome harbors an additional, complete genome of an associated bacterium classified to Paenibacillus sp. This fungus displays multiple altered traits compared to the remaining isolates, regardless of their evolutionary distance. For instance, it has expanded carbon assimilation capabilities, e.g., efficiently degrades carboxylic acids, and has a higher diacylglycerol:triacylglycerol ratio and skewed phospholipid composition which suggests a more rigid cellular membrane. The bacterium can complement the host enzymatic capabilities, alter the fungal metabolism, cell membrane composition but does not change the composition of the cell wall of the fungus. Comparison of early-diverging Umbelopsidales with evolutionary younger Mucorales points at several subtle differences particularly in their carbon source preferences and encoded carbohydrate repertoire. Nevertheless, all tested Mucoromycotina share features including the ability to produce 18:3 gamma-linoleic acid, use TAG as the storage lipid and have fucose as a cell wall component.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Okrasińskae02707-20,

title = {New Endohyphal Relationships between Mucoromycota and Burkholderiaceae Representatives},

author = {Alicja Okrasińska and Aleksandra Bokus and Katarzyna Duk and Aleksandra Gęsiorska and Blanka Sokołowska and Aleksandra Miłobędzka and Marta Wrzosek and Julia Pawłowska},

editor = {Maia Kivisaar},

url = {https://aem.asm.org/content/87/7/e02707-20},

doi = {10.1128/AEM.02707-20},

issn = {0099-2240},

year  = {2021},

date = {2021-01-01},

journal = {Applied and Environmental Microbiology},

volume = {87},

number = {7},

publisher = {American Society for Microbiology Journals},

abstract = {Mucoromycota representatives are known to harbor two types of endohyphal bacteria (EHB)—Burkholderia-related endobacteria (BRE) and Mycoplasma-related endobacteria (MRE). While both BRE and MRE occur in fungi representing all subphyla of Mucoromycota, their distribution is not well studied. Therefore, it is difficult to resolve the evolutionary history of these associations in favor of one of the following two alternative hypotheses explaining their origin: textquotedblleftearly invasiontextquotedblright and textquotedblleftlate invasion.textquotedblright Our main goal was to fill this knowledge gap by surveying Mucoromycota fungi for the presence of EHB. We screened 196 fungal strains from 16 genera using a PCR-based approach to detect bacterial 16S rRNA genes, complemented with fluorescence in situ hybridization (FISH) imaging to confirm the presence of bacteria within the hyphae. We detected Burkholderiaceae in ca. 20% of fungal strains. Some of these bacteria clustered phylogenetically with previously described BRE clades, whereas others grouped with free-living Paraburkholderia. Importantly, the latter were detected in Umbelopsidales, which previously were not known to harbor endobacteria. Our results suggest that this group of EHB is recruited from the environment, supporting the late invasion scenario. This pattern complements the early invasion scenario apparent in the BRE clade of EHB.IMPORTANCE Bacteria living within fungal hyphae present an example of one of the most intimate relationships between fungi and bacteria. Even though there are several well-described examples of such partnerships, their prevalence within the fungal kingdom remains unknown. Our study focused on early divergent terrestrial fungi in the phylum Mucoromycota. We found that ca. 20% of the strains tested harbored bacteria from the family Burkholderiaceae. Not only did we confirm the presence of bacteria from previously described endosymbiont clades, we also identified a new group of endohyphal Burkholderiaceae representing the genus Paraburkholderia. We established that more than half of the screened Umbelopsis strains were positive for bacteria from this new group. We also determined that, while previously described BRE codiverged with their fungal hosts, Paraburkholderia symbionts did not.},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Põlme2020,

title = {FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles},

author = {Sergei Põlme and Kessy Abarenkov and Henrik R. Nilsson and Björn D. Lindahl and Karina Engelbrecht Clemmensen and Havard Kauserud and Nhu Nguyen and Rasmus Kjøller and Scott T. Bates and Petr Baldrian and Tobias Guldberg Frøslev and Kristjan Adojaan and Alfredo Vizzini and Ave Suija and Donald Pfister and Hans Otto Baral and Helle Järv and Hugo Madrid and Jenni Nordén and Jian Kui Liu and Julia Pawłowska and Kadri Põldmaa and Kadri Pärtel and Kadri Runnel and Karen Hansen and Karl Henrik Larsson and Kevin David Hyde and Marcelo Sandoval Denis and Matthew E. Smith and Merje Toome Heller and Nalin N. Wijayawardene and Nelson Menolli and Nicole K. Reynolds and Rein Drenkhan and Sajeewa S. N. Maharachchikumbura and Tatiana B. Gibertoni and Thomas Læssøe and William Davis and Yuri Tokarev and Adriana Corrales and Adriene Mayra Soares and Ahto Agan and Alexandre Reis Machado and Andrés Argüelles Moyao and Andrew Detheridge and Angelina de Meiras Ottoni and Annemieke Verbeken and Arun Kumar Dutta and Bao Kai Cui and C. K. Pradeep and César Marín and Daniel Stanton and Daniyal Gohar and Dhanushka N. Wanasinghe and Eveli Otsing and Farzad Aslani and Gareth W. Griffith and Thorsten H. Lumbsch and Hans Peter Grossart and Hossein Masigol and Ina Timling and Inga Hiiesalu and Jane Oja and John Y. Kupagme and József Geml and Julieta Alvarez Manjarrez and Kai Ilves and Kaire Loit and Kalev Adamson and Kazuhide Nara and Kati Küngas and Keilor Rojas Jimenez and Krišs Bitenieks and Laszlo Irinyi and László Laszlo Nagy and Liina Soonvald and LiWei Zhou and Lysett Wagner and M. Catherine Aime and Maarja Öpik

and María Isabel Mujica and Martin Metsoja and Martin Ryberg and Martti Vasar and Masao Murata and Matthew P. Nelsen and Michelle Cleary and Milan C. Samarakoon and Mingkwan Doilom and Mohammad Bahram

and Niloufar Hagh Doust and Olesya Dulya and Peter Johnston and Petr Kohout and Qian Chen and Qing Tian and Rajasree Nandi and Rasekh Amiri and Rekhani Hansika Perera and Renata dos Santos Chikowski and Renato L. MendesAlvarenga and Roberto Garibay Orijel and Robin Gielen and Rungtiwa Phookamsak and Ruvishika S. Jayawardena and Saleh Rahimlou and Samantha C. Karunarathna and Saowaluck Tibpromma and Shawn P. Brown and Siim Kaarel Sepp and Sunil Mundra and Zhu Hua Luo and Tanay Bose and Tanel Vahter and Tarquin Netherway and Teng Yang and Tom May and Torda Varga and Wei Li and Victor Rafael Matos Coimbra and Virton Rodrigo Targino de Oliveira and Vitor Xavier de Lima and Vladimir S. Mikryukov and Yongzhong Lu and Yosuke Matsuda and Yumiko Miyamoto and Urmas Kõljalg and Leho Tedersoo},

url = {https://link.springer.com/article/10.1007/s13225-020-00466-2#citeas},

doi = {https://doi.org/10.1007/s13225-020-00466-2},

year  = {2020},

date = {2020-11-16},

journal = {Fungal Diversity},

volume = {105},

number = {1},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{8660838,

title = {Outline of Fungi and fungus-like taxa},

author = {N N Wijayawardene and K D Hyde and L K T Al-Ani and L Tedersoo and Danny Haelewaters and K C Rajeshkumar and R L Zhao and A Aptroot and V Leontyev D. and R K Saxena and Y S Tokarev and D Q Dai and P M Letcher and S L Stephenson and D Ertz and H T Lumbsch and M Kukwa and V Issi I. and H Madrid and A J L Phillips and L Selbmann and W P Pfliegler and E Horvath and K Bensch and P M Kirk and K Kolarikova and H A Raja and R Radek and V Papp and B Dima and J Ma and E Malosso and S Takamatsu and G Rambold and P B Gannibal and D Triebel and A K Gautam and S Avasthi and S Suetrong and E Timdal and S C Fryar and G Delgado and M Reblova and M Doilom and S Dolatabadi and Julia Z. Pawłowska and R A Humber and R Kodsueb and I Sanchez-Castro and B T Goto and D K A Silva and F A de Souza and F R Oehl and G A da Silva and I R Silva and J Blaszkowski and K Jobim and L C Maia and F R Barbosa and P O Fiuza and P K Divakar and B D Shenoy and R F Castaneda-Ruiz and S Somrithipol and A A Lateef and S C Karunarathna and S Tibpromma and P E Mortimer and D N Wanasinghe and R Phookamsak and J Xu and Y Wang and F Tian and P Alvarado and D W Li and I Kusan and N Matocec and A Masic and Z Tkalcec and S S N Maharachchikumbura and M Papizadeh and G Heredia and F Wartchow and M Bakhshi and E Boehm and N Youssef and V P Hustad and J D Lawrey and A L C M A Santiago and J D P Bezerra and C M Souza-Motta and A L Firmino and Q Tian and J Houbraken and S Hongsanan and K Tanaka and A J Dissanayake and J S Monteiro and H P Grossart and A Suija and G Weerakoon and J Etayo and A Tsurykau and V Vazquez and P Mungai and U Damm and Q R Li and H Zhang and S Boonmee and Y Z Lu and A G Becerra and B Kendrick and F Q Brearley and J Motiejunaite and B Sharma and R Khare and S Gaikwad and D S A Wijesundara and L Z Tang and M Q He and A Flakus and P Rodriguez-Flakus and M P Zhurbenko and E H C McKenzie and M Stadler and D J Bhat and J K Liu and M Raza and R Jeewon and E S Nassonova and M Prieto and R G U Jayalal and M Erdogdu and A Yurkov and M Schnittler and O N Shchepin and Y K Novozhilov and A G S Silva-Filho and E Gentekaki and P Liu and J C Cavender and Y Kang and S Mohammad and L F Zhang and R F Xu and Y M Li and M C Dayarathne and A H Ekanayaka and T C Wen and C Y Deng and O L Pereira and S Navathe and D L Hawksworth and X L Fan and L S Dissanayake and E Kuhnert and M Thines},

url = {http://dx.doi.org/10.5943/mycosphere/11/1/8},

doi = {http://dx.doi.org/10.5943/mycosphere/11/1/8},

issn = {2077-7000},

year  = {2020},

date = {2020-01-01},

journal = {Mycosphere},

volume = {11},

number = {1},

pages = {1060--1456},

publisher = {Mycosphere Press},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Tischer2019Nov,

title = {New fossils of ascomycetous anamorphic fungi from Baltic amber},

author = {Marta Tischer and Michał Gorczak and Błażej Bojarski and Julia Pawłowska and Christel Hoffeins and Hans Werner Hoffeins and Marta Wrzosek},

doi = {10.1016/j.funbio.2019.08.003},

issn = {1878-6146},

year  = {2019},

date = {2019-11-01},

journal = {Fungal Biology},

volume = {123},

number = {11},

pages = {804--810},

publisher = {British Mycological SocietyElsevier Ltd},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{pawlowska2019,

title = {Carbon assimilation profiles of mucoralean fungi show their metabolic versatility},

author = {Julia Pawłowska and Alicja Okrasińska and Kamil Kisło and Tamara Aleksandrzak-Piekarczyk and Katarzyna Szatraj and Somayeh Dolatabadi and Anna Muszewska },

url = {https://www.nature.com/articles/s41598-019-48296-w#citeas},

doi = {https://doi.org/10.1038/s41598-019-48296-w},

year  = {2019},

date = {2019-08-14},

journal = {Scientific Reports},

volume = {9},

pages = {11864},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Crous2019Jun,

title = {Fungal Planet description sheets: 868-950},

author = {Crous PW and Carnegie AJ and Wingfield MJ and Sharma R and Mughini G and Noordeloos ME and Santini A and Shouche YS and Bezerra JDP and Dima B and Guarnaccia V and Imrefi I and Jurjević Ž and Knapp DG and Kovács GM and Magistà D and Perrone G and Rämä T and Rebriev YA and Shivas RG and Singh SM and Souza-Motta CM and Thangavel R and Adhapure NN and Alexandrova AV and Alfenas AC and Alfenas RF and Alvarado P and Alves AL and Andrade DA and Andrade JP and Barbosa RN and Barili A and Barnes CW and Baseia IG and Bellanger JM and Berlanas C and Bessette AE and Bessette AR and Biketova AY and Bomfim FS and Brandrud TE and Bransgrove K and Brito ACQ and Cano-Lira JF and Cantillo T and Cavalcanti AD and Cheewangkoon R and Chikowski RS and Conforto C and Cordeiro TRL and Craine JD and Cruz R and Damm U and Oliveira de RJV and Souza de JT and Souza de HG and Dearnaley JDW and Dimitrov RA and Dovana F and Erhard A and Esteve-Raventós F and Félix CR and Ferisin G and Fernandes RA and Ferreira RJ and Ferro LO and Figueiredo CN and Frank JL and Freire KTLS and García D and Gené J and Gêsiorska A and Gibertoni TB and Gondra RAG and Gouliamova DE and Gramaje D and Guard F and Gusmão LFP and Haitook S and Hirooka Y and Houbraken J and Hubka V and Inamdar A and Iturriaga T and Iturrieta-González I and Jadan M and Jiang N and Justo A and Kachalkin AV and Kapitonov VI and Karadelev M and Karakehian J and Kasuya T and Kautmanová I and Kruse J and Kušan I and Kuznetsova TA and Landell MF and Larsson KH and Lee HB and Lima DX and Lira CRS and Machado AR and Madrid H and Magalhães OMC and Majerova H and Malysheva EF and Mapperson RR and Marbach PAS and Martín MP and Martín-Sanz A and Matočec N and McTaggart AR and Mello JF and Melo RFR and Mešić A and Michereff SJ and Miller AN and Minoshima A and Molinero-Ruiz L and Morozova OV and Mosoh D and Nabe M and Naik R and Nara K and Nascimento SS and Neves RP and Olariaga I and Oliveira RL and Oliveira TGL and Ono T and Ordoñez ME and Ottoni AM and Paiva LM and Pancorbo F and Pant B and Pawłowska J and Peterson SW and Raudabaugh DB and Rodríguez-Andrade E and Rubio E and Rusevska K and Santiago ALCMA and Santos ACS and Santos C and Sazanova NA and Shah S and Sharma J and Silva BDB and Siquier JL and Sonawane MS and Stchigel AM and Svetasheva T and Tamakeaw N and Telleria MT and Tiago PV and Tian CM and Tkalčec Z and Tomashevskaya MA and Truong HH and Vecherskii MV and Visagie CM and Vizzini A and Yilmaz N and Zmitrovich IV and Zvyagina EA and Boekhout T and Kehlet T and Læssøe T and Groenewald JZ.},

url = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6712538/},

doi = {10.3767/persoonia.2019.42.11},

year  = {2019},

date = {2019-06-01},

journal = {Persoonia},

volume = {42},

pages = {291},

publisher = {Westerdijk Fungal Biodiversity Institute},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{jof5040110,

title = {The XVIII Congress of European Mycologists: Conference Report},

author = {Julia Pawłowska and Magdalena Frąc and Izabela Kałucka and Małgorzata Ruszkiewicz-Michalska and Sylwia Różalska and Marta Wrzosek},

url = {https://www.mdpi.com/2309-608X/5/4/110},

doi = {10.3390/jof5040110},

issn = {2309-608X},

year  = {2019},

date = {2019-01-01},

journal = {Journal of Fungi},

volume = {5},

number = {4},

abstract = {The 18th Congress of European Mycologists took place from 16 to 21 September 2019 in Warsaw and Białowieża, Poland (Figure 1) [...]},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{BANASIAK201994,

title = {Aureoboletus projectellus (Fungi, Boletales) – An American bolete rapidly spreading in Europe as a new model species for studying expansion of macrofungi},

author = {Łukasz Banasiak and Marcin Pietras and Marta Wrzosek and Alicja Okrasińska and Michał Gorczak and Marta Kolanowska and Julia Pawłowska},

url = {http://www.sciencedirect.com/science/article/pii/S1754504818301491},

doi = {https://doi.org/10.1016/j.funeco.2018.12.006},

issn = {1754-5048},

year  = {2019},

date = {2019-01-01},

journal = {Fungal Ecology},

volume = {39},

pages = {94 - 99},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{dolatabadi2019,

title = {Chaetothyrialean fungi from aromatic hydrocarbon-polluted environments of Iran},

author = {Somayeh Dolatabadi and Ali Rezaei-Matehkolaei and Julia Pawlowska and Seyyed Abolfazl Hosseini and Mohammad Javad Najafzadeh and Hugo Madrid},

url = {http://dx.doi.org/10.1127/nova_hedwigia/2018/0509},

doi = {10.1127/nova_hedwigia/2018/0509},

year  = {2019},

date = {2019-01-01},

journal = {Nova Hedwigia},

volume = {108},

number = {3-4},

pages = {405-426},

publisher = {Schweizerbart Science Publishers},

address = {Stuttgart, Germany},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Romaniuk2018Jul,

title = {Insight into heavy metal resistome of soil psychrotolerant bacteria originating from King George Island (Antarctica)},

author = {Krzysztof Romaniuk and Anna Ciok and Przemyslaw Decewicz and Witold Uhrynowski and Karol Budzik and Marta Nieckarz and Julia Pawłowska and Marek K Zdanowski and Dariusz Bartosik and Lukasz Dziewit},

doi = {10.1007/s00300-018-2287-4},

issn = {1432-2056},

year  = {2018},

date = {2018-07-01},

journal = {Polar Biology},

volume = {41},

number = {7},

pages = {1319--1333},

publisher = {Springer Berlin Heidelberg},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Zamora2018,

title = {Considerations and consequences of allowing DNA sequence data as types of fungal taxa},

author = {Zamora, Juan Carlos and (...) and Pawłowska, Julia and (...) and Ekman, Stefan},

url = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6048565/},

doi = {10.5598/imafungus.2018.09.01.10},

year  = {2018},

date = {2018-05-24},

journal = {IMA Fungus},

volume = {9},

number = {1},

pages = {167-175},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{4ed53db950814a7ebd07f50586eb547b,

title = {Notes for genera: basal clades of Fungi (including Aphelidiomycota, Basidiobolomycota, Blastocladiomycota, Calcarisporiellomycota, Caulochytriomycota, Chytridiomycota, Entomophthoromycota, Glomeromycota, Kickxellomycota, Monoblepharomycota, Mortierellomycota, Mucoromycota, Neocallimastigomycota, Olpidiomycota, Rozellomycota and Zoopagomycota)},

author = {Nalin N. Wijayawardene and Julia Pawłowska and Peter M. Letcher and Paul M. Kirk and Richard A. Humber and Arthur Schüßer and Marta Wrzosek and Anna Muszewska and Alicja Okrasińska and Łukasz Istel and Aleksandra Gęsiorska and Paul Mungai and Adebola Azeez Lateef and Kunhiraman C. Rajeshkumar and Rajshree V. Singh and Renate Radek and Grit Walther and Lysett Wagner and Christopher Walker and Siril D. A. Wijesundara and Moslem Papizadeh and Somayeh Dolatabadi and Belle D. Shenoy and Yuri S. Tokarev and Saisamorn Lumyong and Kevin D. Hyde},

doi = {10.1007/s13225-018-0409-5},

issn = {1560-2745},

year  = {2018},

date = {2018-01-01},

journal = {Fungal Diversity},

volume = {92},

number = {1},

pages = {43--129},

publisher = {Springer},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Muszewska2017Aug,

title = {Fungal lifestyle reflected in serine protease repertoire},

author = {Anna Muszewska and Marta M Stepniewska-Dziubinska and Kamil Steczkiewicz and Julia Pawłowska and Agata Dziedzic and Krzysztof Ginalski},

url = {https://www.nature.com/articles/s41598-017-09644-w},

doi = {10.1038/s41598-017-09644-w},

issn = {2045-2322},

year  = {2017},

date = {2017-08-01},

journal = {Scientific Reports},

volume = {7},

number = {9147},

pages = {1-12},

publisher = {Nature Publishing Group},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Crous2017Jun,

title = {Fungal Planet description sheets: 558-624},

author = {Crous Pedro W. and Wingfield MJ and Burgess TI and Hardy GESJ and Barber PA and Alvarado P and Barnes CW and Buchanan PK and Heykoop M and Moreno G and Thangavel R and Spuy van der S and Barili A and Barrett S and Cacciola SO and Cano-Lira JF and Crane C and Decock C and Gibertoni TB and Guarro J and Guevara-Suarez M and Hubka V and Kolařík M and Lira CRS and Ordoñez ME and Padamsee M and Ryvarden L and Soares AM and Stchigel AM and Sutton DA and Vizzini A and Weir BS and Acharya K and Aloi F and Baseia IG and Blanchette RA and Bordallo JJ and Bratek Z and Butler T and Cano-Canals J and Carlavilla JR and Chander J and Cheewangkoon R and Cruz RHSF and Silva da M and Dutta AK and Ercole E and Escobio V and Esteve-Raventós F and Flores JA and Gené J and Góis JS and Haines L and Held BW and Jung MH and Hosaka K and Jung T and Jurjević Ž and Kautman V and Kautmanova I and Kiyashko AA and Kozanek M and Kubátová A and Lafourcade M and La Spada F and Latha KPD and Madrid H and Malysheva EF and Manimohan P and Manjón JL and Martín MP and Mata M and Merényi Z and Morte A and Nagy I and Normand AC and Paloi S and Pattison N and Pawłowska Julia and Pereira OL and Petterson ME and Picillo B and Raj KNA and Roberts A and Rodríguez A and Rodríguez-Campo FJ and Romański Maciej and Ruszkiewicz-Michalska Małgorzata and Scanu B and Schena L and Semelbauer M and Sharma R and Shouche YS and Silva V and Staniaszek-Kik M and Stielow JB and Tapia C and Taylor PWJ and Toome-Heller M and Vabeikhokhei JMC and Diepeningen van AD and Van Hoa N and M VT and Wiederhold NP and Wrzosek Marta and Zothanzama J and Groenewald JZ.},

url = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5645186/},

doi = {10.3767/003158517X698941},

year  = {2017},

date = {2017-06-01},

journal = {Persoonia},

volume = {38},

pages = {240},

publisher = {Westerdijk Fungal Biodiversity Institute},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{PMID:29200362,

title = {Psychronectria hyperantarctica, gen. nov., comb. nov., epitypification and phylogenetic position of an Antarctic bryophilous ascomycete},

author = {Julia Pawłowska and Łukasz Istel and Michał Gorczak and Halina Galera and Marta Wrzosek and David L Hawksworth},

url = {https://doi.org/10.1080/00275514.2017.1398575},

doi = {10.1080/00275514.2017.1398575},

issn = {0027-5514},

year  = {2017},

date = {2017-01-01},

journal = {Mycologia},

volume = {109},

number = {4},

pages = {601—607},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{WRZOSEK2017134,

title = {The progressive spread of Aureoboletus projectellus (Fungi, Basidiomycota) in Europe},

author = {Marta Wrzosek and Jurga Motiejūnaitė and Jonas Kasparavičius and Mateusz Wilk and Edgars Mukins and Jürgen Schreiner and Mikhail Vishnevskiy and Michał Gorczak and Alicja Okrasińska and Łukasz Istel and Julia Pawłowska},

url = {http://www.sciencedirect.com/science/article/pii/S175450481730020X},

doi = {https://doi.org/10.1016/j.funeco.2017.02.003},

issn = {1754-5048},

year  = {2017},

date = {2017-01-01},

journal = {Fungal Ecology},

volume = {27},

pages = {134 - 136},

abstract = {The American bolete Aureoboletus projectellus was first reported in Europe in the first decade of this century. At the beginning, it was only observed on the Baltic Sea shore. Since 2014, the range of this fungus has been significantly expanding, at present it reaches more than 150 km inland and encompasses five countries. Recently, mass occurrences of its fruit bodies were observed in Latvia, Lithuania, and Poland. A. projectellus forms mycorrhizas with native European trees in the range of their natural distribution (Pinus sylvestris) as well as in the areas where they were introduced (Pinus mugo).},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{pub.1093155946,

title = {Fungal diversity notes 603–708: taxonomic and phylogenetic notes on genera and species},

author = {Kevin D Hyde and Chada Norphanphoun and Vanessa P Abreu and Anna Bazzicalupo and K W Thilini Chethana and Marco Clericuzio and Monika C Dayarathne and Asha J Dissanayake and Anusha H Ekanayaka and Mao-Qiang He and Sinang Hongsanan and Shi-Ke Huang and Subashini C Jayasiri and Ruvishika S Jayawardena and Anuruddha Karunarathna and Sirinapa Konta and Ivana Kušan and Hyun Lee and Junfu Li and Chuan-Gen Lin and Ning-Guo Liu and Yong-Zhong Lu and Zong-Long Luo and Ishara S Manawasinghe and Ausana Mapook and Rekhani H Perera and Rungtiwa Phookamsak and Chayanard Phukhamsakda and Igor Siedlecki and Adriene Mayra Soares and Danushka S Tennakoon and Qing Tian and Saowaluck Tibpromma and Dhanushka N Wanasinghe and Yuan-Pin Xiao and Jing Yang and Xiang-Yu Zeng and Faten A Abdel-Aziz and Wen-Jing Li and Indunil C Senanayake and Qiu-Ju Shang and Dinushani A Daranagama and Nimali I de Silva and Kasun M Thambugala and Mohamed A Abdel-Wahab and Ali H Bahkali and Mary L Berbee and Saranyaphat Boonmee and Jayarama D Bhat and Timur S Bulgakov and Bart Buyck and Erio Camporesi and Rafael F Castañeda-Ruiz and Putarak Chomnunti and Minkwan Doilom and Francesco Dovana and Tatiana B Gibertoni and Margita Jadan and Rajesh Jeewon and Gareth E B Jones and Ji-Chuan Kang and Samantha C Karunarathna and Young Woon Lim and Jian-Kui Liu and Zuo-Yi Liu and Helio Longoni Plautz and Saisamorn Lumyong and Sajeewa S N Maharachchikumbura and Neven Matočec and Eric H C McKenzie and Armin Mešić and Daniel Miller and Julia Pawłowska and Olinto L Pereira and Itthayakorn Promputtha and Andrea I Romero and Leif Ryvarden and Hong-Yan Su and Satinee Suetrong and Zdenko Tkalčec and Alfredo Vizzini and Ting-Chi Wen and Komsit Wisitrassameewong and Marta Wrzosek and Jian-Chu Xu and Qi Zhao and Rui-Lin Zhao and Peter E Mortimer},

url = {https://app.dimensions.ai/details/publication/pub.1093155946},

doi = {10.1007/s13225-017-0391-3},

year  = {2017},

date = {2017-01-01},

journal = {Fungal Diversity},

volume = {87},

number = {1},

pages = {1-235},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{sierota2016,

title = {The impact of Phlebiopsis gigantea treatment on bacterial and fungal communities inhabiting Norway spruce stumps},

author = {Sierota Zbigniew and Wrzosek Marta and Sikora Katarzyna and Biedunkiewicz Anna and Pawłowska Julia and Tarwacki Grzegorz and Małecka Monika and Żółciak Anna },

url = {https://forestscience.mein-epaper.at/getcatalog.do?catalogId=10442&lang=en},

year  = {2016},

date = {2016-09-01},

journal = {Austrian Journal of Forest Science},

volume = {133},

number = {3},

pages = {203-222},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Gorczak2016May,

title = {First record of Hesperomyces virescens (Laboulbeniales, Ascomycota) on Harmonia axyridis (Coccinellidae, Coleoptera) in Poland},

author = {Michał Gorczak and Marta Tischer and Julia Pawłowska and Marta Wrzosek},

url = {https://pbsociety.org.pl/journals/index.php/am/article/view/am.1071/0},

doi = {10.5586/am.1071},

issn = {2353-074X},

year  = {2016},

date = {2016-05-01},

journal = {Acta Mycologica},

volume = {51},

number = {1},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{pub.1002892238,

title = {Fungal diversity notes 253–366: taxonomic and phylogenetic contributions to fungal taxa},

author = {Guo Jie Li and Kevin D Hyde and Rui Lin Zhao and Sinang Hongsanan and Faten Awad Abdel-Aziz and Mohamed A Abdel-Wahab and Pablo Alvarado and Genivaldo Alves-Silva and Joseph F Ammirati and Hiran A Ariyawansa and Abhishek Baghela and Ali Hassan Bahkali and Michael Beug and Jayarama D Bhat and Dimitar Bojantchev and Thitiya Boonpratuang and Timur S Bulgakov and Erio Camporesi and Marcela C Boro and Oldriska Ceska and Dyutiparna Chakraborty and Jia Jia Chen and Thilini K W Chethana and Putarak Chomnunti and Giovanni Consiglio and Bao Kai Cui and Dong Qin Dai and Yu Cheng Dai and Dinushani A Daranagama and Kanad Das and Monika C Dayarathne and Eske De Crop and Rafael J V De Oliveira and Carlos Alberto Fragoso de Souza and José I de Souza and Bryn T M Dentinger and Asha J Dissanayake and Mingkwan Doilom and Ricardo E Drechsler-Santos and Masoomeh Ghobad-Nejhad and Sean P Gilmore and Aristóteles Góes-Neto and Michał Gorczak and Charles H Haitjema and Kalani Kanchana Hapuarachchi and Akira Hashimoto and Mao Qiang He and John K Henske and Kazuyuki Hirayama and Maria J Iribarren and Subashini C Jayasiri and Ruvishika S Jayawardena and Sun Jeong Jeon and Gustavo H Jerônimo and Ana L Jesus and Gareth E B Jones and Ji Chuan Kang and Samantha C Karunarathna and Paul M Kirk and Sirinapa Konta and Eric Kuhnert and Ewald Langer and Haeng Sub Lee and Hyang Burm Lee and Wen Jing Li and Xing Hong Li and Kare Liimatainen and Diogo Xavier Lima and Chuan Gen Lin and Jian Kui Liu and Xings Zhong Liu and Zuo Yi Liu and Jennifer J Luangsa-ard and Robert Lücking and Thorsten H Lumbsch and Saisamorn Lumyong and Eduardo M Leaño and Agostina V Marano and Misato Matsumura and Eric H C McKenzie and Suchada Mongkolsamrit and Peter E Mortimer and Thi Thuong Thuong Nguyen and Tuula Niskanen and Chada Norphanphoun and Michelle A O’Malley and Sittiporn Parnmen and Julia Pawłowska and Rekhani H Perera and Rungtiwa Phookamsak and Chayanard Phukhamsakda and Carmen L A Pires-Zottarelli and Olivier Raspé and Mateus A Reck and Sarah C O Rocha and André L C M A de Santiago and Indunil C Senanayake and Ledo Setti and Qiu Ju Shang and Sanjay K Singh and Esteban B Sir and Kevin V Solomon and Jie Song and Prasert Srikitikulchai and Marc Stadler and Satinee Suetrong and Hayato Takahashi and Takumasa Takahashi and Kazuaki Tanaka and Li Ping Tang and Kasun M Thambugala and Donnaya Thanakitpipattana and Michael K Theodorou and Benjarong Thongbai and Tuksaporn Thummarukcharoen and Qing Tian and Saowaluck Tibpromma and Annemieke Verbeken and Alfredo Vizzini and Josef Vlasák and Kerstin Voigt and Dhanushka N Wanasinghe and Yong Wang and Gothamie Weerakoon and Hua An Wen and Ting Chi Wen and Nalin N Wijayawardene and Sarunyou Wongkanoun and Marta Wrzosek and Yuan Pin Xiao and Jian Chu Xu and Ji Ye Yan and Jing Yang and Shu Da Yang and Yu Hu and Jin Feng Zhang and Jie Zhao and Li Wei Zhou and Derek Peršoh and Alan J L Phillips and Sajeewa S N Maharachchikumbura},

url = {https://app.dimensions.ai/details/publication/pub.1002892238 and https://hau.collections.crest.ac.uk/9284/1/Mike%20Theodorou%20Fungal%2BDiversity%202%20April.pdf},

doi = {10.1007/s13225-016-0366-9},

year  = {2016},

date = {2016-01-01},

journal = {Fungal Diversity},

volume = {78},

number = {1},

pages = {1-237},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{WRZOSEK20161,

title = {New insights on the phylogeny and biology of the fungal ant pathogen Aegeritella},

author = {Marta Wrzosek and Grzegorz Dubiel and Michał Gorczak and Julia Pawłowska and Marta Tischer and Stanisław Bałazy},

url = {http://www.sciencedirect.com/science/article/pii/S0022201115300343},

doi = {https://doi.org/10.1016/j.jip.2015.11.005},

issn = {0022-2011},

year  = {2016},

date = {2016-01-01},

journal = {Journal of Invertebrate Pathology},

volume = {133},

pages = {1 - 7},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{PAWLOWSKA2016752,

title = {Preliminary studies on the evolution of carbon assimilation abilities within Mucorales},

author = {Julia Pawłowska and Tamara Aleksandrzak-Piekarczyk and Agnieszka Banach and Bartosz Kiersztyn and Anna Muszewska and Lidia Serewa and Katarzyna Szatraj and Marta Wrzosek},

url = {http://www.sciencedirect.com/science/article/pii/S1878614616000416},

doi = {https://doi.org/10.1016/j.funbio.2016.02.004},

issn = {1878-6146},

year  = {2016},

date = {2016-01-01},

journal = {Fungal Biology},

volume = {120},

number = {5},

pages = {752 - 763},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Ruszkiewicz-Michalska2016Jan,

title = {Preliminary studies of fungi in the Biebrza National Park (NE Poland). Part III. Micromycetes - new data},

author = {Malgorzata Ruszkiewicz-Michalska and Stanisław Bałazy and Jerzy Chełkowski and Maria Dynowska and Julia Pawłowska and Ewa Sucharzewska and Jarosław Szkodzik and Cezary Tkaczuk and Mateusz Wilk and Marta Wrzosek},

url = {https://pbsociety.org.pl/journals/index.php/am/article/view/am.1067/0},

doi = {10.5586/am.1067},

issn = {2353-074X},

year  = {2016},

date = {2016-01-01},

journal = {Acta Mycologica},

volume = {50},

number = {2},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{ROZALSKA2015166,

title = {Biodegradation of nonylphenol by a novel entomopathogenic Metarhizium robertsii strain},

author = {Sylwia Różalska and Adrian Soboń and Julia Pawłowska and Marta Wrzosek and Jerzy Długoński},

url = {http://www.sciencedirect.com/science/article/pii/S0960852415006756},

doi = {https://doi.org/10.1016/j.biortech.2015.05.011},

issn = {0960-8524},

year  = {2015},

date = {2015-01-01},

journal = {Bioresource Technology},

volume = {191},

pages = {166 - 172},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Wilk2014Dec,

title = {Wentiomyces sp. from plant litter on poor fen in northeastern Poland},

author = {Mateusz Wilk and Julia Pawłowska and Marta Wrzosek},

url = {https://pbsociety.org.pl/journals/index.php/am/article/view/am.2014.021},

doi = {10.5586/am.2014.021},

issn = {2353-074X},

year  = {2014},

date = {2014-12-01},

journal = {Acta Mycologica},

volume = {49},

number = {2},

pages = {237--247},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Wilk_Pawłowska_Wrzosek_Gorczak_Suska-Malawska_2014,

title = {Colonization of decomposing Sphagnum moss litter by mycorrhizal roots in two types of peatland ecosystems},

author = {Mateusz Wilk and Julia Pawłowska and Marta Wrzosek and Michał Gorczak and Małgorzata Suska-Malawska},

url = {https://czasopisma.uni.lodz.pl/biologica/article/view/7429},

doi = {10.2478/fobio-2014-0009},

year  = {2014},

date = {2014-11-01},

journal = {Folia Biologica et Oecologica},

volume = {10},

pages = {113-121},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Muszewska2014Aug,

title = {Biology, systematics, and clinical manifestations of Zygomycota infections},

author = {Anna Muszewska and Julia Pawłowska and Paweł Krzyściak},

url = {https://link.springer.com/article/10.1007/s10096-014-2076-0},

doi = {10.1007/s10096-014-2076-0},

issn = {1435-4373},

year  = {2014},

date = {2014-08-01},

journal = {European Journal of Clinical Microbiology & Infectious Diseases},

volume = {33},

number = {8},

pages = {1273-1287},

publisher = {Springer Berlin Heidelberg},

keywords = {},

pubstate = {published},

tppubtype = {article}

}

@article{Hyde2014Jul,

title = {One stop shop: backbones trees for important phytopathogenic genera: I (2014)},

author = {Kevin D Hyde and Henrik R Nilsson and Aisyah S Alias and Hiran A Ariyawansa and Jaime E Blair and Lei Cai and Arthur W A M de Cock and Asha J Dissanayake and Sally L Glockling and Ishani D Goonasekara and Michał Gorczak and Matthias Hahn and Ruvishika S Jayawardena and Jan A L van Kan and Matthew H Laurence and André C Lévesque and Xinghong Li and Jian-Kui Liu and Sajeewa S N Maharachchikumbura and Dimuthu S Manamgoda and Frank N Martin and Eric H C McKenzie and Alistair R McTaggart and Peter E Mortimer and Prakash V R Nair and Julia Pawłowska and Tara L Rintoul and Roger G Shivas and Christoffel F J Spies and Brett A Summerell and Paul W J Taylor and Razak B Terhem and Dhanushka Udayanga and Niloofar Vaghefi and Grit Walther and Mateusz Wilk and Marta Wrzosek and Jian-Chu Xu and JiYe Yan and Nan Zhou},

url = {https://link.springer.com/article/10.1007/s13225-014-0298-1},

doi = {10.1007/s13225-014-0298-1},

issn = {1878-9129},

year  = {2014},

date = {2014-07-01},

journal = {Fungal Diversity},

volume = {67},

number = {1},

pages = {21-125},

publisher = {Springer Netherlands},

keywords = {},

pubstate = {published},

tppubtype = {article}

}