Mykologia terenowa – Field Mycology
USOS code: 1400-225MT-en, USOS
Coordinators and teachers: Julia Pawłowska (julia.z.pawlowska@uw.edu.pl), Marta Wrzosek (ma.wrzosek@uw.edu.pl), Ondřej Koukol (ondrej.koukol@natur.cuni.cz), Jacob Heilmann-Clausen (jheilmann-clausen@sund.ku.dk), Thomas Laessoe, Petr Zehnálek, Anna Kujawa, Marcin Piątek
Dates: 28.08.2023-03.09.2023
Venue: Park Narodowy Gór Stołowych, Karłów, Centrum Szkoleniowo-Edukacyjne (map)
Sanger sequencing results [link]
Distribution of Fungi in Poland:
- grzyby.pl
- gbif.org
- Results of fungal inventories from Góry Stołowe National Park [link]
- national checklists of Fungi [link]
- Protected Fungi of Poland [link]
- Red List of Polish Fungi [link]
Protocols for nanopore barcoding of specimens [link]
MinION sequencing results will be announced within 1 month.
Online workshop 25.08.2023 “The use of molecular data in fungal identification and taxonomy“
- workshop programme [download pdf file]
- general introduction [download pdf file]
- presentation on DNA sequence editing [download pdf file]
- test results [download zip file]
- DNA Subway: https://dnasubway.cyverse.org/
- usage of NCBI BLAST search [download pdf file]
- test sequences [download txt file]
- submit your results to online form [link]
- paper to read [download pdf file]
- online tools for building simple phylogenetic trees [http://www.phylogeny.fr/simple_phylogeny.cgi]
- mycological data handling in PlutoF [download pdf file]
Announcements:
- the course starts on Monday, August 28th at 4 pm in Centrum Szkoleniowo-Edukacyjne (Karlów). Please, be on time!
- on Friday, August 25th an on-line introductory workshop is planned (estimated 10 a.m. – 2 p.m.)
- 2nd announcement [pdf file]
- 1st announcement [pdf file]
- Before the course you should install following apps:
- PlutoF (https://plutof.ut.ee/):
- Create PlutoF account. It can be registered here: https://app.plutof.ut.ee/register.
- Join project: Summer School 2023: From Fungal Morphology to Genotype
- Install PlutofGO app on your mobile:
- You can try out gathering biodiversity data without logging in, but to send gathered data to PlutoF biodiversity workbench, logging in with PlutoF account is required.
- Atlas of Danish Fungi
- Visit the portal: https://svampe.databasen.org/en/
- Install Atlas of Danish Fungi app on your mobile:
- PlutoF (https://plutof.ut.ee/):
- things you should bring [link]
- preliminary programme [pdf file]
Materials:
- webpages:
- other:
- Book “protected Fungi of Poland” (in Polish) [pdf file]
- rozporządzenie Ministra Środowiska z dnia 9 października 2014 w sprawie ochrony gatunkowej grzybów
- Gutowski i wsp. (2022): Drugie życie drzewa (wydanie II; in Polish)
- Bibiec et al. (2005): The afterlife of a tree (1st edition; in English)
- Red list of plant parasitic microfungi of Germany
- (old) molecular odentification of fungi
- DNA sequence editing [download pdf file]
- test results [download zip file]
KURS DLA KANDYDATÓW NA KLASYFIKATORA GRZYBÓW ŚWIEŻYCH (PL)
- materiały do pobrania [link]
If you have any questions, contact coordinators.
Materials from previous editions:
2022/23:
- SEQUENCING RESULTS [download zip file]
2021/22:
- Phylogenetic workshop:
- workshop introduction [download zip file]
- sequences [download zip file]
- simple phylogeny manual [download pdf]
- Diversity of Fungi in Białowieża Primeval Forest:
- Checklist of microfungi and larger ascomycetes of Bialowieza Forest
- Grzyby wielkoowocnikowe Puszczy Białowieskiej
- Kujawa et al. (2017): Różnorodność wielkoowocnikowych grzybów agarykoidalnych, boletoidalnych i hypogeicznych Puszczy Białowieskiej – założenia projektu i wstępne wyniki
- Kujawa et al. (2018): Ile gatunków grzybów rośnie w Puszczy Białowieskiej? Wystawy grzybów źródłem nowych danych
- Kujawa et al. (2020): XXV WYSTAWA GRZYBÓW PUSZCZY BIAŁOWIESKIEJ. MATERIAŁY DO POZNANIA MYKOBIOTY PUSZCZY BIAŁOWIESKIEJ
- Gorczak et al. (2021): 18th Congress of European Mycologists Bioblitz 2019 – Naturalists Contribute to the Knowledge of Mycobiota and Lichenobiota of Białowieża Primeval Forest