Mykologia terenowa – Field Mycology

USOS code: 1400-225MT-en, USOS

Coordinators and teachers: Julia Pawłowska (julia.z.pawlowska@uw.edu.pl), Marta Wrzosek (ma.wrzosek@uw.edu.pl), Ondřej Koukol (ondrej.koukol@natur.cuni.cz), Jacob Heilmann-Clausen (jheilmann-clausen@sund.ku.dk), Thomas Laessoe, Petr Zehnálek, Anna Kujawa, Marcin Piątek

Dates: 28.08.2023-03.09.2023

Venue: Park Narodowy Gór Stołowych, Karłów, Centrum Szkoleniowo-Edukacyjne (map)

Sanger sequencing results [link]

Distribution of Fungi in Poland:

• grzyby.pl
• gbif.org
• Results of fungal inventories from Góry Stołowe National Park [link]
• national checklists of Fungi [link]
• Protected Fungi of Poland [link]
• Red List of Polish Fungi [link]

Protocols for nanopore barcoding of specimens [link]

MinION sequencing results will be announced within 1 month.

Online workshop 25.08.2023 “The use of molecular data in fungal identification and taxonomy“

• workshop programme [download pdf file]
• general introduction [download pdf file]
• presentation on DNA sequence editing [download pdf file]
  • test results [download zip file]
  • DNA Subway: https://dnasubway.cyverse.org/
• usage of NCBI BLAST search [download pdf file]
  • test sequences [download txt file]
  • submit your results to online form [link]
  • paper to read [download pdf file]
• online tools for building simple phylogenetic trees [http://www.phylogeny.fr/simple_phylogeny.cgi]
• mycological data handling in PlutoF [download pdf file]

Announcements:

• the course starts on Monday, August 28^th at 4 pm in Centrum Szkoleniowo-Edukacyjne (Karlów). Please, be on time!
• on Friday, August 25^th an on-line introductory workshop is planned (estimated 10 a.m. – 2 p.m.)
• 2^nd announcement [pdf file]
• 1^st announcement [pdf file]
• Before the course you should install following apps:
  • PlutoF (https://plutof.ut.ee/):
    • Create PlutoF account. It can be registered here: https://app.plutof.ut.ee/register.
    • Join project: Summer School 2023: From Fungal Morphology to Genotype
    • Install PlutofGO app on your mobile:
      • Android: https://play.google.com/store/apps/details?id=com.plutof.go
      • iOS: https://apps.apple.com/app/plutof-go/id1633390609
    • You can try out gathering biodiversity data without logging in, but to send gathered data to PlutoF biodiversity workbench, logging in with PlutoF account is required.
  • Atlas of Danish Fungi
    • Visit the portal: https://svampe.databasen.org/en/
    • Install Atlas of Danish Fungi app on your mobile:
      • Android: https://play.google.com/store/apps/details?id=com.noque.svampeatlas&hl=da&gl=US&pli=1
      • iOS: https://apps.apple.com/dk/app/danmarks-svampeatlas/id1467728588?l=da
• things you should bring [link]
• preliminary programme [pdf file]

Materials:

• webpages:
  • www.grzyby.pl
  • mycena.no
  • http://www.mycokey.com/Downloads/FungiOfTemperateEurope_Wheels.pdf
  • https://nature.berkeley.edu/brunslab/pmb113/
  • http://www.fungi-without-borders.eu/en/species-lookup
  • Forest Data Bank: https://www.bdl.lasy.gov.pl/portal/mapy-en
  • iNaturalist: https://www.inaturalist.org/
• other:
  • Book “protected Fungi of Poland” (in Polish) [pdf file]
  • rozporządzenie Ministra Środowiska z dnia 9 października 2014 w sprawie ochrony gatunkowej grzybów
  • Gutowski i wsp. (2022): Drugie życie drzewa (wydanie II; in Polish)
  • Bibiec et al. (2005): The afterlife of a tree (1st edition; in English)
  • Red list of plant parasitic microfungi of Germany
• (old) molecular odentification of fungi
  • DNA sequence editing [download pdf file]
  • test results [download zip file]

KURS DLA KANDYDATÓW NA KLASYFIKATORA GRZYBÓW ŚWIEŻYCH (PL)

• materiały do pobrania [link]

If you have any questions, contact coordinators.

 

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Materials from previous editions:

2022/23:

• SEQUENCING RESULTS [download zip file]

2021/22:

• Phylogenetic workshop:
  • workshop introduction [download zip file]
  • sequences [download zip file]
  • simple phylogeny manual [download pdf]
• Diversity of Fungi in Białowieża Primeval Forest:
  • Checklist of microfungi and larger ascomycetes of Bialowieza Forest
  • Grzyby wielkoowocnikowe Puszczy Białowieskiej
  • Kujawa et al. (2017): Różnorodność wielkoowocnikowych grzybów agarykoidalnych, boletoidalnych i hypogeicznych Puszczy Białowieskiej – założenia projektu i wstępne wyniki
  • Kujawa et al. (2018): Ile gatunków grzybów rośnie w Puszczy Białowieskiej? Wystawy grzybów źródłem nowych danych
  • Kujawa et al. (2020): XXV WYSTAWA GRZYBÓW PUSZCZY BIAŁOWIESKIEJ. MATERIAŁY DO POZNANIA MYKOBIOTY PUSZCZY BIAŁOWIESKIEJ
  • Gorczak et al. (2021): 18th Congress of European Mycologists Bioblitz 2019 – Naturalists Contribute to the Knowledge of Mycobiota and Lichenobiota of Białowieża Primeval Forest